I just looked at the bottom of a larger print I was doing on the MK2 which has a PEI bed and I am getting a similar look but very faint. You really have to look for it. I think it could be that fine line of squish, first layer speed and flow rate. To much squish and you start to restrict the flow which could explain why the issue is more toward the middle and not the edges. Guessing here.
I’ve had that happen to me, it’s always due to a nozzle height that is a few hundredths of a mm too close to the build plate. What happens is that on large areas of infill, the plastic starts to be pushed to the side by the previous line. This adds up and you get left with the pattern you are seeing.
Raise your nozzle height by about 0.03mm and the pattern will go away.
@cobnut Did you ever get this figured out? I am using some black ABS and am getting the exact same thing. I raised the nozzle height and reduced the extrusion multiplier a little and it seemed to help some.
It really looks like over extrusion as I watch it. If I look at the top of the first layer it is not smooth. It gets a wavy texture going that corresponds to the pattern on the under side.
Just to update (and close) this thread, it looks like @Nebbian was spot on. Fiddling with the z-height from the bed dramatically changes this effect and with fine tuning it can be solved and it certainly seems to be that too close is what causes the problem. Of course, go too high and you start to lose adhesion and the desired squishing and it really is a tiny adjustment - just 0.02mm makes a difference. Luckily, the live z adjust on the Prusa i3 Mk2 makes it easy to play with - just start printing a decent sized square and adjust in steps, allowing each step a cm or so of printed “width”. Make sure you make a note of the settings for each step, then stop the print before the first layer completes (to make it easy to see which direction it was printing in), you should then be able to pick which setting gave the best results.
I know you marked this as solved but I suspect the source cause may still exist.
I spent months trying to fix something that looked identical to your print.
Now there’s more than one reason that might contribute to this wavy effect but in my case the right side trapezoidal z nut had about 0.75mm vertical play.
The reason that it propagates as a wave like pattern is simple. As the print head moves across the layer all it takes is a tiny bit of under or over extrusion to start the pattern. On the next line the print head hits the side of that spot and because it’s a little loose the head moves vertically as it rides the bump or dip. Then it tends to expand and get more waves as the print head jumps around. Rock each side of your z axis up and down to see if you have some play like I did. Also check your print head as the play might originate there too.