Simplify3d has a problem with internal circles. You can read it all over their forums.
The issue is they do not compensate for the fact that internal spaces - squish inward when printed.
Think of it like this- if you know what a pool noodle is. (those long foam tubes people/kids play with in their pools)- if you take the pool noodle and form a circle, it will be wrinkled inside, because there is no place for the foam to go.
The same thing happens when you take circles and print them. The outside is stretched, the inside is squished.
It is something many have complained on the s3d forums about, but it has not been resolved in their slicer. So you need to compensate in your design.