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2 months later
Check your retract settings. If there is a slight curling at the edges of your print (more prominent when printing overhangs without support), then your nozzle may be catching on a cooled lip whilst travelling across to print a new area. I found that increasing the z travel on retractions to around 0.5 mm rather than 0.2, this stopped happening. (This is assuming you didn’t change your acceleration or travel feed rates of course).
When your bottom layers were freeflow, your wouldn’t have had any tiny areas of over extrusion etc. so there would have been less to catch the nozzle on.